get.genocol

For each of the dosages 0 to ploidy a color is generated,
and an additional one for samples with no dosage assigned.

Genotyping assays for bi-allelic markers (e.g. SNPs) produce
signal intensities for the two alleles. 'fitPoly' assigns genotypes
(allele dosages) to a collection of polyploid samples based on these
signal intensities. 'fitPoly' replaces the older package 'fitTetra' that was
limited (a.o.) to only tetraploid populations whereas 'fitPoly' accepts any
ploidy level. Reference: Voorrips RE, Gort G, Vosman B (2011)
<doi:10.1186/1471-2105-12-172>.
New functions added on conversion of data from SNP array software formats,
drawing of XY-scatterplots with or without genotype colors,
checking against expected F1 segregation patterns,
comparing results from two different assays (probes) for the same SNP,
recovery from a saveMarkerModels() crash.

Giorgio Tumino

fitPoly

Genotype Calling for Bi-Allelic Marker Assays

Gerrit Gort

Alejandro Therese Navarro

get.genocol function

<dl><dt>ploidy</dt>
<dd>any ploidy level &gt;= 2</dd>
<dt>pastel</dt>
<dd>if TRUE (default) light (pastel) colors are generated, else more
intense colors</dd></dl>

Arguments

Generate a set of genotype (dosage) colors for XY-plots — get.genocol

<dl>

<dt>ploidy</dt>
<dd>any ploidy level &gt;= 2</dd>


<dt>pastel</dt>
<dd>if TRUE (default) light (pastel) colors are generated, else more
intense colors</dd>

</dl>

get.genocol: Generate a set of genotype (dosage) colors for XY-plots

Description

Usage

Value

Arguments

Details