segtypeInfoSummary

From a list of segregation types as produced by calcSegtypeInfo
or selSegtypeInfo, produce a data frame that only lists the parental
dosage combinations for each segtype and whether these produce the
segtype under polysomic, disomic and/or mixed inheritance.
Useful to quickly look up which segtypes match a given parental dosage
combination.

Genotyping assays for bi-allelic markers (e.g. SNPs) produce
signal intensities for the two alleles. 'fitPoly' assigns genotypes
(allele dosages) to a collection of polyploid samples based on these
signal intensities. 'fitPoly' replaces the older package 'fitTetra' that was
limited (a.o.) to only tetraploid populations whereas 'fitPoly' accepts any
ploidy level. Reference: Voorrips RE, Gort G, Vosman B (2011)
<doi:10.1186/1471-2105-12-172>.
New functions added on conversion of data from SNP array software formats,
drawing of XY-scatterplots with or without genotype colors,
checking against expected F1 segregation patterns,
comparing results from two different assays (probes) for the same SNP,
recovery from a saveMarkerModels() crash.

Giorgio Tumino

fitPoly

Genotype Calling for Bi-Allelic Marker Assays

Gerrit Gort

Alejandro Therese Navarro

segtypeInfoSummary function

<dl><dt>segtypeInfo</dt>
<dd>a list as returned by calcSegtypeInfo or selSegtypeInfo</dd></dl>

Arguments

Summarize the segtypeInfo list — segtypeInfoSummary

<dl>

<dt>segtypeInfo</dt>
<dd>a list as returned by calcSegtypeInfo or selSegtypeInfo</dd>

</dl>

segtypeInfoSummary: Summarize the segtypeInfo list

Description

Usage

Value

Arguments