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flare (version 0.9.6)

Family of Lasso Regression

Description

The package "flare" provides the implementation of a family of Lasso variants including Dantzig Selector, LAD Lasso, SQRT Lasso, Lq Lasso for estimating high dimensional sparse linear model. We adopt the alternating direction method of multipliers and convert the original optimization problem into a sequential L1 penalized least square minimization problem, which can be efficiently solved by combining the linearization and the efficient coordinate descent algorithm. The computation is memory-optimized using the sparse matrix output. Besides the sparse linear model estimation, we also provide the extension of these Lasso variants to sparse Gaussian graphical model estimation including TIGER and CLIME using either L1 or adaptive penalty.

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Version

Install

install.packages('flare')

Monthly Downloads

1,007

Version

0.9.6

License

GPL-2

Maintainer

Xingguo Li

Last Published

November 27th, 2012

Functions in flare (0.9.6)

eyedata

Gene expression data for Bardet-Biedl syndrome from Scheetz et al. (2006)
flare-internal

Internal flare functions
flare.tiger

Tuning Insensitive Graph Estimation and Regression
print.roc

Print function for S3 class "roc"
print.select

Print function for S3 class "select"
plot.slim

Plot function for S3 class "slim"
flare.tiger.select

Model selection for high-dimensional undirected graph estimation
flare.tiger.generator

Data generator for undirected graph estimation.
flare.slim

Sparse Linear Regression using Non-smooth Loss Functions and L1 Regularization
flare.plot

Graph visualization
plot.tiger

Plot function for S3 class "flare.tiger"
flare.tiger.roc

Draw ROC Curve for a graph path
plot.select

Plot function for S3 class "select"
print.slim

Print a flare.slim Object
print.sim

Print function for S3 class "sim"
flare-package

flare: Family of Lasso Regression
print.tiger

Print a flare.tiger Object
plot.sim

Plot function for S3 class "sim"
plot.roc

Plot function for S3 class "roc"