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flare (version 0.9.9)

Family of Lasso Regression

Description

The package "flare" provides the implementation of a family of Lasso variants including Dantzig Selector, LAD Lasso, SQRT Lasso, Lq Lasso for estimating high dimensional sparse linear model. For Dantzig selector and Lq Lasso, we adopt the alternating direction method of multipliers (ADMM) and convert the original optimization problem into a sequential L1 penalized least square minimization problem, which can be efficiently solved by combining the linearization and the efficient coordinate descent algorithm. For LAD and SQRT Lasso, we adopt the combination of the dual smoothing and monotone fast iterative soft-thresholding algorithm (MFISTA). The computation is memory-optimized using the sparse matrix output. Besides the sparse linear model estimation, we also provide the extension of these Lasso variants to sparse Gaussian graphical model estimation including TIGER and CLIME (ADMM) using either L1 or adaptive L1 penalty.

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Version

Install

install.packages('flare')

Monthly Downloads

1,007

Version

0.9.9

License

GPL-2

Maintainer

Xingguo Li

Last Published

April 1st, 2013

Functions in flare (0.9.9)

print.sim

Print function for S3 class "sim"
flare.plot

Graph visualization
plot.roc

Plot function for S3 class "roc"
plot.tiger

Plot function for S3 class "flare.tiger"
flare.tiger.roc

Draw ROC Curve for a graph path
print.select

Print function for S3 class "select"
flare-package

flare: Family of Lasso Regression
eyedata

Gene expression data for Bardet-Biedl syndrome from Scheetz et al. (2006)
flare.tiger.generator

Data generator for undirected graph estimation.
flare-internal

Internal flare functions
print.slim

Print a flare.slim Object
plot.sim

Plot function for S3 class "sim"
plot.select

Plot function for S3 class "select"
flare.tiger.select

Model selection for high-dimensional undirected graph estimation
print.roc

Print function for S3 class "roc"
flare.slim

Sparse Linear Regression using Non-smooth Loss Functions and L1 Regularization
print.tiger

Print a flare.tiger Object
flare.tiger

Tuning Insensitive Graph Estimation and Regression
plot.slim

Plot function for S3 class "slim"