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flare (version 1.0.0)

Family of Lasso Regression

Description

The package "flare" provides the implementation of a family of high-dimensional Lasso regression based machine learning toolkits, including a family of various Lasso regression and sparse Gaussian graphical model estimation. Lasso variants including Dantzig Selector, LAD Lasso, SQRT Lasso for estimating high dimensional sparse linear model. The sparse Gaussian graphical model estimation includes TIGER and CLIME using L1 penalty. We adopt the combination of the dual smoothing and monotone fast iterative soft-thresholding algorithm (MFISTA). The computation is memory-optimized using the sparse matrix output.

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Version

Install

install.packages('flare')

Monthly Downloads

1,007

Version

1.0.0

License

GPL-2

Maintainer

Xingguo Li

Last Published

August 27th, 2013

Functions in flare (1.0.0)

eyedata

Gene expression data for Bardet-Biedl syndrome from Scheetz et al. (2006)
flare.plot

Graph visualization
plot.tiger

Plot function for S3 class "flare.tiger"
print.tiger

Print a flare.tiger Object
flare.tiger.generator

Data generator for undirected graph estimation.
flare-package

flare: Family of Lasso Regression
print.select

Print function for S3 class "select"
plot.select

Plot function for S3 class "select"
print.roc

Print function for S3 class "roc"
flare.tiger.select

Model selection for high-dimensional undirected graph estimation
flare.tiger

Tuning Insensitive Graph Estimation and Regression
plot.roc

Plot function for S3 class "roc"
print.slim

Print a flare.slim Object
flare-internal

Internal flare functions
flare.tiger.roc

Draw ROC Curve for a graph path
plot.slim

Plot function for S3 class "slim"
flare.slim

Sparse Linear Regression using Non-smooth Loss Functions and L1 Regularization
print.sim

Print function for S3 class "sim"
plot.sim

Plot function for S3 class "sim"