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flipflop (version 1.10.0)

Fast lasso-based isoform prediction as a flow problem

Description

Flipflop discovers which isoforms of a gene are expressed in a given sample together with their abundances, based on RNA-Seq read data. It takes an alignment file in SAM format as input. It can also discover transcripts from several samples simultaneously, increasing statistical power.

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Version

Version

1.10.0

License

GPL-3

Maintainer

Elsa Bernard

Last Published

February 15th, 2017

Functions in flipflop (1.10.0)