flowClust-package: Clustering for Flow Cytometry

Description

Robust model-based clustering using a $t$ mixture model with Box-Cox transformation.

Arguments

Index

box: Box-Cox Transformation
density,flowClust-method: Grid of Density Values for the Fitted $t$ Mixture Model with Box-Cox Transformation
dmvt: Density of the Multivariate $t$ Distribution with Box-Cox Tranformation
dmvtmix: Density of the Multivariate $t$ Mixture Distribution with Box-Cox Tranformation
flowClust: Robust Model-based Clustering for Flow Cytometry
hist,flowClust-method: 1-D Density Plot (Histogram) of Clustering Results
Map,flowClust-method: Cluster Assignment Based on Clustering Results
miscellaneous: Various Functions for Retrieving Information from Clustering Results
plot,flowClust-method: Scatterplot of Clustering Results
plot,flowDens-method: Contour or Image Plot of Clustering Results
plot,flowFrame,tmixFilterResult-method: Scatterplot / 1-D Density Plot of Filtering (Clustering) Results
rbox: Reverse Box-Cox Transformation
ruleOutliers,flowClust-method: Showing or Modifying the Rule used to Identify Outliers
show,flowClust-method: Show Method for flowClust / tmixFilterResult Object
show,tmixFilter-method: Show Method for tmixFilter Object
SimulateMixture: Random Generation from a $t$ Mixture Model with Box-Cox Transformation
split,flowClust-method: Splitting Data Based on Clustering Results
Subset,flowClust-method: Subsetting Data Based on Clustering Results
summary,flowClust-method: Summary Method for flowClust Object
tmixFilter: Creating Filters and Filtering Flow Cytometry Data

Details

Package:

flowClust

Type:

Package

Version:

2.0.0

Depends:

R(>= 2.5.0), methods, mnormt, mclust, ellipse, Biobase, flowCore

Collate:

SetClasses.R SetMethods.R plot.R flowClust.R SimulateMixture.R

biocViews:

Clustering, Statistics, Visualization

License:

Artistic-2.0

Built:

R 2.6.1; universal-apple-darwin8.10.1; 2008-03-26 20:54:42; unix

References

Lo, K., Brinkman, R. R. and Gottardo, R. (2008) Automated Gating of Flow Cytometry Data via Robust Model-based Clustering. Cytometry A 73, 321-332.