flowCore (version 1.38.2)

normalizeView-class: Class "normalizeView"

Description

Class and method to capture the result of normalization operations in a flow cytometry workflow.

Usage

normalizeView(workflow, ID=paste("normViewRef", guid(), sep="_"), name="default", action, data)

Arguments

workflow

An object of class workFlow for which a view is to be created.

ID

A unique identifier of the view, most likely created by using the internal guid function.

name

A more human-readable name of the view.

data, action

References to the data and actionItem objects, respectively.

Value

A reference to the normalizeView that is created inside the workFlow environment as a side effect of calling the add method.A normalizeView object for the constructor.

Objects from the Class

Objects should be created using the add method, which creates a normalizeView from a normalization object and directly assigns it to a workFlow. Alternatively, one can use the normalizeView constructor function for more programmatic access.

Slots

ID:

Object of class "character". A unique identifier for the view.

name:

Object of class "character". A more human-readable name

action:

Object of class "fcActionReference". A reference to the actionItem that generated the view.

env:

Object of class "environment". The evaluation environment in the workFlow.

data:

Object of class "fcDataReference" A reference to the data that is associated to the view.

Extends

Class "view", directly.

Methods

Rm

signature(symbol = "normalizeView", envir = "workFlow", subSymbol = "character"): Remove a normalizeView from a workFlow. This method is recursive and will also remove all dependent views and actionItems.

See Also

workFlow, view, gateView, transformView, compensateView, actionItem

Examples

showClass("view")