flowWorkspace (version 3.16.0)

getData,GatingHierarchy,missing-method: get gated flow data from a GatingHierarchy/GatingSet/GatingSetList

Description

get gated flow data from a GatingHierarchy/GatingSet/GatingSetList

Usage

"getData"(obj, y, ...)
"getData"(obj, y, ...)
"getData"(obj, y, ...)
"getData"(obj, y, ...)
"getData"(obj, y, ...)

Arguments

obj

A GatingHierarchy, GatingSet or GatingSetList object.

y

character the node name or full(/partial) gating path. If not specified, will return the complete flowFrame/flowSet at the root node.

...

arguments passed to ncdfFlow::[[

Value

A flowFrame object if obj is a GatingHierarchy. A flowSet or ncdfFlowSet if a GatingSet. A ncdfFlowList if a GatingSetList.

Details

Returns a flowFrame/flowSet containing the events in the gate defined at node y. Subset membership can be obtained using getIndices. Population statistics can be obtained using getPop and getPopStats. When calling getData on a GatingSet,the trees representing the GatingHierarchy for each sample in the GaingSet are presumed to have the same structure. To update the data, use flowData method.

See Also

flowData getIndices getPopStats

Examples

## Not run: 
#     #G is a GatingSet
#     geData(G,3) #get a flowSet constructed from the third node / population in the tree.
#     geData(G,"cd4")
# 
#     #gh is a GatingHierarchy
#     getData(gh)
# ## End(Not run)