getFJWSubsetIndices

<code>character</code> The name of the keyword.

<code>character</code> The value of the keyword.

value

<code>numeric</code> The group of samples to subset.

group

<code>TRUE</code> or <code>FALSE</code>, specifying whether we include only samples that have gates attached or whether we include any sample in the workspace.

requiregates


This function will calculate the indices of a subset of samples in a flowJoWorkspace, based on a keyword/value filter. It is applied to a specific group of samples in the workspace. The output is meant to be passed to the subset= argument of parseWorkspace.


This package is designed to facilitate comparison of automated
gating methods against manual gating done in flowJo. This package allows
you to import basic flowJo workspaces into BioConductor and replicate the
gating from flowJo using the flowCore functionality. Gating hierarchies,
groups of samples, compensation, and transformation are performed so that
the output matches the flowJo analysis.

getFJWSubsetIndices: Fetch the indices for a subset of samples in a flowJo workspace, based on a keyword value pair

Description

Usage

Arguments

Value

Details

See Also