extractKinematics.traj

trajectoryset

trajectoryID

The frame rate of acquisition for the images, in
milliseconds

acquisitionFrequency

The value of micro(?)meters to which each single pixel
  corresponds

scala

The computed set of parameters include <code>delta.x</code>, <code>delta.t</code> and <code>delta.v</code>
(displacements and instantaneous velocity), <code>totalTime</code>, <code>totalDistance</code>,
<code>distStartToEnd</code>, <code>curvilinearVelocity</code>, <code>straightLineVelocity</code> and
<code>linearityForwardProgression</code>, Mean Squared Displacement, velocity
autocorrelation, and more

flowcatchR is a set of tools to analyze in vivo microscopy imaging
    data, focused on tracking flowing blood cells. It guides the steps from
    segmentation to calculation of features, filtering out particles not of
    interest, providing also a set of utilities to help checking the quality of
    the performed operations (e.g. how good the segmentation was). It allows investigating the 
    issue of tracking flowing cells such as in blood vessels, to categorize the particles in 
    flowing, rolling and adherent. This classification is applied in the study of phenomena such as
    hemostasis and study of thrombosis development. Moreover, flowcatchR presents an integrated 
    workflow solution, based on the integration with a Shiny App and Jupyter notebooks, which is 
    delivered alongside the package, and can enable fully reproducible bioimage analysis in the 
    R environment. 

extractKinematics.traj: Calculate a set of kinematics parameters from a single trajectory

Description

Usage

Arguments

Value