Usage
link.particles(particleset, L, R = 2, epsilon1 = 0.1, epsilon2 = 2,
lambda1 = 1, lambda2 = 1, penaltyFunction = penaltyFunctionGenerator(),
verboseOutput = FALSE, prog = FALSE, include.intensity = TRUE,
include.area = TRUE)
Arguments
particleset
A ParticleSet object
L
Maximum number of pixels an object can move in two consecutive frames
R
Linkrange, i.e. the number of consecutive frames to search for potential candidate links
epsilon1
A numeric value, to be used in the formula. Jitter for allowing angular displacements
epsilon2
A numeric value, to be used in the formula. Jitter for allowing spatial displacements
lambda1
A numeric value. Multiplicative factor for the penalty function
lambda2
A numeric value. Multiplicative factor applied to the angular displacement
penaltyFunction
A function structured in such a way to be applied as penalty function in the linking
verboseOutput
Logical, whether the output should report additional intermediate steps. For debugging use mainly
prog
Logical, whether the a progress bar should be shown during the tracking phase
include.intensity
Logical, whether to include also intensity change of the particles in the cost function calculation
include.area
Logical, whether to include also area change of the particles in the cost function calculation