matchTrajToParticles

particleset

A <code>TrajectorySet</code> object coupled to the <code>particleset</code>

trajectoryset

Match trajectories to the related particles in the <code>TrajectorySet</code> and
<code>ParticleSet</code> objects. This function returns a new <code>ParticleSet</code>
object that contains as additional column the trajectory ID that the particular
particle was assigned to. Used also by other routines, such as <code><a href="/link/snap?package=flowcatchR&version=1.6.2" rd-options="" data-mini-rdoc="flowcatchR::snap">snap</a></code>

flowcatchR is a set of tools to analyze in vivo microscopy imaging
    data, focused on tracking flowing blood cells. It guides the steps from
    segmentation to calculation of features, filtering out particles not of
    interest, providing also a set of utilities to help checking the quality of
    the performed operations (e.g. how good the segmentation was). It allows investigating the 
    issue of tracking flowing cells such as in blood vessels, to categorize the particles in 
    flowing, rolling and adherent. This classification is applied in the study of phenomena such as
    hemostasis and study of thrombosis development. Moreover, flowcatchR presents an integrated 
    workflow solution, based on the integration with a Shiny App and Jupyter notebooks, which is 
    delivered alongside the package, and can enable fully reproducible bioimage analysis in the 
    R environment. 

Federico Marini

flowcatchR

Tools to analyze in vivo microscopy imaging data focused on
    tracking flowing blood cells

matchTrajToParticles function

Match trajectories to the related particles in the <code>TrajectorySet</code> and
<code>ParticleSet</code> objects. This function returns a new <code>ParticleSet</code>
object that contains as additional column the trajectory ID that the particular
particle was assigned to. Used also by other routines, such as <code><a href="snap" rd-options="">snap</a></code>

matchTrajToParticles: Match trajectories to related particles.

Description

Usage

Arguments

Value

Examples