particles

A <code>Frames</code> object with the raw images (mandatory)

raw.frames

A <code>Frames</code> object with preprocessed images (optional, if not provided gets produced with standard default parameters)

binary.frames

Character string. The channel to perform the operations on. Can be <code>red</code>, <code>green</code> or <code>blue</code>

channel

a <code>MulticoreParam</code> object, used to control the performances inside the <code>BiocParallel</code> call to process
frames in parallel by taking advantage of the computing infrastructure available

BPPARAM

Extracts particles from the images of a <code>Frames</code> object.

flowcatchR is a set of tools to analyze in vivo microscopy imaging
    data, focused on tracking flowing blood cells. It guides the steps from
    segmentation to calculation of features, filtering out particles not of
    interest, providing also a set of utilities to help checking the quality of
    the performed operations (e.g. how good the segmentation was). It allows investigating the 
    issue of tracking flowing cells such as in blood vessels, to categorize the particles in 
    flowing, rolling and adherent. This classification is applied in the study of phenomena such as
    hemostasis and study of thrombosis development. Moreover, flowcatchR presents an integrated 
    workflow solution, based on the integration with a Shiny App and Jupyter notebooks, which is 
    delivered alongside the package, and can enable fully reproducible bioimage analysis in the 
    R environment. 

particles: Extracts particles from the images of a `Frames` object.

Description

Usage

Arguments

Value

Examples