select.particles

A <code>ParticleSet</code> object. A <code>LinkedParticleSet</code> object can also be provided as input, yet the returned object will be a <code>ParticleSet</code> object that needs to be linked again

particleset

Size in pixels of the minimum area needed to detect the object as a potential particle of interest

min.area

Size in pixels of the maximum area allowed to detect the object as a potential particle of interest

max.area

According to parameters of interests, such as size, eccentricity/shape, filters out the particles that do not
satisfy the indicated requirements

flowcatchR is a set of tools to analyze in vivo microscopy imaging
    data, focused on tracking flowing blood cells. It guides the steps from
    segmentation to calculation of features, filtering out particles not of
    interest, providing also a set of utilities to help checking the quality of
    the performed operations (e.g. how good the segmentation was). It allows investigating the 
    issue of tracking flowing cells such as in blood vessels, to categorize the particles in 
    flowing, rolling and adherent. This classification is applied in the study of phenomena such as
    hemostasis and study of thrombosis development. Moreover, flowcatchR presents an integrated 
    workflow solution, based on the integration with a Shiny App and Jupyter notebooks, which is 
    delivered alongside the package, and can enable fully reproducible bioimage analysis in the 
    R environment. 

select.particles: Performs filtering on a `ParticleSet` object

Description

Usage

Arguments

Value

Examples