fmriAR (version 0.3.1)

afni_restricted_plan: Build an AFNI-style restricted AR plan from root parameters

Description

Build an AFNI-style restricted AR plan from root parameters

Usage

afni_restricted_plan(
  resid,
  runs = NULL,
  parcels = NULL,
  p = 3L,
  roots,
  estimate_ma1 = TRUE,
  exact_first = TRUE
)

Value

An fmriAR_plan with method = "afni" that can be supplied to whiten_apply().

Arguments

resid

(n x v) residual matrix (used only if estimate_ma1=TRUE)

runs

integer vector length n (optional)

parcels

integer vector length v (optional; if provided, plan pooling='parcel')

p

either 3 or 5

roots

either a single list with elements named as needed - for p=3: list(a, r1, t1, vrt = 1.0) - for p=5: list(a, r1, t1, r2, t2, vrt = 1.0) or a named list of such lists keyed by parcel id (character) for per-parcel specs.

estimate_ma1

logical, if TRUE estimate MA(1) on AR residuals to mimic AFNI's additive white

exact_first

apply exact AR(1) scaling at segment starts (harmless here; default TRUE)

Examples

NULL