fmriAR (version 0.3.1)

sandwich_from_whitened_resid: GLS standard errors from whitened residuals

Description

GLS standard errors from whitened residuals

Usage

sandwich_from_whitened_resid(
  Xw,
  Yw,
  beta = NULL,
  type = c("iid", "hc0"),
  df_mode = c("rankX", "n-p"),
  runs = NULL
)

Value

List containing standard errors, innovation variances, and XtX inverse.

Arguments

Xw

Whitened design matrix.

Yw

Whitened data matrix (time x voxels).

beta

Optional coefficients (p x v); estimated if NULL.

type

Either "iid" (default) or "hc0" for a robust sandwich.

df_mode

Degrees-of-freedom mode: "rankX" (default) or "n-p".

runs

Optional run labels (reserved for future per-run scaling).

Examples

# Generate example whitened data
n_time <- 200
n_pred <- 3
n_voxels <- 50
Xw <- matrix(rnorm(n_time * n_pred), n_time, n_pred)
Yw <- matrix(rnorm(n_time * n_voxels), n_time, n_voxels)

# Compute standard errors
se_result <- sandwich_from_whitened_resid(Xw, Yw, type = "iid")

# Extract standard errors for first voxel
se_voxel1 <- se_result$se[, 1]