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foodingraph (version 0.1.0)

Food Network Inference and Visualization

Description

Displays a weighted undirected food graph from an adjacency matrix. Can perform confidence-interval bootstrap inference with mutual information or maximal information coefficient. Based on my Master 1 internship at the Bordeaux Population Health center. References : Reshef et al. (2011) , Meyer et al. (2008) , Liu et al. (2016) .

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Install

install.packages('foodingraph')

Monthly Downloads

220

Version

0.1.0

License

GPL-3

Issues

0

Pull Requests

0

Stars

4

Forks

1

Maintainer

Victor Gasque

Last Published

October 6th, 2019

Functions in foodingraph (0.1.0)

compare_graphs

Compare two graphs
family_palette

Generate a color palette for nodes family
save_graph

Save graph
mic_adj_matrix

Computes a MIC adjacency matrix
boot_cat_bin

Bootstrap inference on binary and categorical variables
boot_simulated_cat_bin

Confidence-interval bootstraps on simulated independent variables
links_nodes_from_mat

Extracts links and nodes
graph_from_matrix

Display a graph from an adjacency matrix
graph_from_links_nodes

Display a graph from a list of links and nodes
foodingraph

foodingraph: a package for food network inference