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frailtypack (version 2.2-26)

General Frailty models using a semi_parametrical penalized likelihood estimation or a parametrical estimation

Description

Frailtypack now fits several classes of frailty models using a penalized likelihood estimation on the hazard function but also a parametrical estimation. 1) A shared gamma frailty model and Cox proportional hazard model. Clustered and recurrent survival times can be studied (the Andersen-Gill(1982) approach has been implemented for recurrent events). An automatic choice of the smoothing parameter is possible using an approximated cross-validation procedure. 2) Additive frailty models for proportional hazard models with two correlated random effects (intercept random effect with random slope). 3) Nested frailty models for hierarchically clustered data (with 2 levels of clustering) by including two iid gamma random effects. 4) Joint frailty models in the context of joint modelling of recurrent events with terminal event. Prediction values are available. Left truncated, right-censored data, interval-censored data (only for Cox proportional hazard and shared frailty model) and strata (max=2) are allowed. The package includes concordance measures for Cox proportional hazards models and for shared frailty models.

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Version

Install

install.packages('frailtypack')

Monthly Downloads

2,571

Version

2.2-26

License

GPL (>= 2.0)

Maintainer

Virginie Rondeau

Last Published

October 19th, 2012

Functions in frailtypack (2.2-26)

dataNested

Simulated data with two levels of grouping
frailtyPenal for Nested frailty models

Fit a Nested Frailty model using a semi-parametrical penalized likelihood estimation or a parametrical estimation
print.frailtyPenal

Print a Short Summary of parameter estimates of a shared gamma frailty model
dataJoint

Simulated data with recurrent events and informative terminal event
hazard

Hazard function.
dataAdditive

Simulated data as a gathering of clinical trials databases
print.Cmeasures

Print a short summary of results of Cmeasure function.
SurvIC

Create a survival object for interval censoring and possibly left truncated data
dataJointClus

a simulated data for JointCluster.
frailtypack-package

General Frailty models using a semi-parametrical penalized likelihood estimation or a parametrical estimation
plot.nestedPenal

Plot Method for a Nested frailty model.
additivePenal

Fit an Additive Frailty model using a semi-parametrical penalized likelihood estimation or a parametrical estimation
summary.jointPenal

summary of parameter estimates of a joint frailty model
plot.additivePenal

Plot Method for an Additive frailty model.
frailtyPenal for Joint frailty models

Fit Joint Frailty model for recurrent and terminal events using semi-parametrical penalized likelihood estimation or a parametrical estimation
subcluster

Identify subclusters
survival

Survival function
print.jointPenal

Print a Short Summary of parameter estimates of a joint frailty model
terminal

Identify terminal indicator
plot.frailtyPenal

Plot Method for a Shared frailty model.
print.additivePenal

Print a Short Summary of parameter estimates of an additive frailty model
summary.frailtyPenal

summary of parameter estimates of a shared frailty model
summary.nestedPenal

summary of regression coefficient estimates of a nested frailty model
print.nestedPenal

Print a Short Summary of parameter estimates of a nested frailty model
diabetes

Interval-censored data for time from onset of diabetes to the onset of diabetic nephronpathy
readmission

Rehospitalization colorectal cancer
slope

Identify variable associated with the random slope
summary.additivePenal

summary of parameter estimates of an additive frailty model
frailtyPenal for Shared frailty models

Fit a Shared Gamma Frailty model using a semi-parametrical penalized likelihood estimation or parametrical estimation
Cmeasures

Concordance measures in shared frailty and Cox models
plot.jointPenal

Plot Method for a Joint frailty model.
ForInternalUse

For internal use only ...