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frailtypack (version 2.2-27)

General Frailty models using a semi_parametric penalized likelihood estimation or a parametric estimation

Description

Frailtypack now fits several classes of frailty models using a penalized likelihood estimation on the hazard function but also a parametric estimation. 1) A shared gamma frailty model and Cox proportional hazard model. Clustered and recurrent survival times can be studied (the Andersen-Gill(1982) approach has been implemented for recurrent events). An automatic choice of the smoothing parameter is possible using an approximated cross-validation procedure. 2) Additive frailty models for proportional hazard models with two correlated random effects (intercept random effect with random slope). 3) Nested frailty models for hierarchically clustered data (with 2 levels of clustering) by including two iid gamma random effects. 4) Joint frailty models in the context of joint modelling for recurrent events with terminal event for clustered data or not. Prediction values are available. Left truncated (not for Joint model), right-censored data, interval-censored data (only for Cox proportional hazard and shared frailty model) and strata (max=2) are allowed. The package includes concordance measures for Cox proportional hazards models and for shared frailty models.

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Version

Install

install.packages('frailtypack')

Monthly Downloads

2,571

Version

2.2-27

License

GPL (>= 2.0)

Maintainer

Virginie Rondeau

Last Published

November 27th, 2012

Functions in frailtypack (2.2-27)

SurvIC

Create a survival object for interval censoring and possibly left truncated data
readmission

Rehospitalization colorectal cancer
dataAdditive

Simulated data as a gathering of clinical trials databases
summary.jointPenal

summary of parameter estimates of a joint frailty model
Cmeasures

Concordance measures in shared frailty and Cox models
summary.frailtyPenal

summary of parameter estimates of a shared frailty model
plot.additivePenal

Plot Method for an Additive frailty model.
additivePenal

Fit an Additive Frailty model using a semi-parametric penalized likelihood estimation or a parametric estimation
terminal

Identify terminal indicator
print.additivePenal

Print a Short Summary of parameter estimates of an additive frailty model
print.nestedPenal

Print a Short Summary of parameter estimates of a nested frailty model
print.jointPenal

Print a Short Summary of parameter estimates of a joint frailty model
plot.nestedPenal

Plot Method for a Nested frailty model.
frailtyPenal for Joint frailty models

Fit Joint Frailty model for recurrent and terminal events using semi-parametric penalized likelihood estimation or a parametric estimation
subcluster

Identify subclusters
hazard

Hazard function.
diabetes

Interval-censored data for time from onset of diabetes to the onset of diabetic nephronpathy
frailtyPenal for Nested frailty models

Fit a Nested Frailty model using a semi-parametric penalized likelihood estimation or a parametric estimation
summary.nestedPenal

summary of regression coefficient estimates of a nested frailty model
dataNested

Simulated data with two levels of grouping
survival

Survival function
plot.jointPenal

Plot Method for a Joint frailty model.
summary.additivePenal

summary of parameter estimates of an additive frailty model
print.Cmeasures

Print a short summary of results of Cmeasure function.
plot.frailtyPenal

Plot Method for a Shared frailty model.
slope

Identify variable associated with the random slope
frailtyPenal for Shared frailty models

Fit a Shared Gamma Frailty model using a semi-parametric penalized likelihood estimation or parametric estimation
ForInternalUse

For internal use only ...
num.id

Identify individuals in Joint model for clustered data
print.frailtyPenal

Print a Short Summary of parameter estimates of a shared gamma frailty model
frailtypack-package

General Frailty models using a semi-parametric penalized likelihood estimation or a parametric estimation