read.nifti1.data

Read raw NIFTI v1 data from file (which may contain the FreeSurfer hack).

Provides functions to read and write neuroimaging data in various file formats, with a focus on 'FreeSurfer' <http://freesurfer.net/> formats. This includes, but is not limited to, the following file formats: 1) MGH/MGZ format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surface mesh, given by a list of vertices and a list of faces.

Tim Schc3<a4>fer

freesurferformats

Read and Write 'FreeSurfer' Neuroimaging File Formats

Tim Schäfer

read.nifti1.data function

<dl><dt>filepath</dt>
<dd>path to a NIFTI v1 file (single file version), which can contain the FreeSurfer hack.</dd>
<dt>drop_empty_dims</dt>
<dd>logical, whether to drop empty dimensions in the loaded data array.</dd>
<dt>header</dt>
<dd>optional nifti header obtained from <code>read.nifti1.header</code>. Will be loaded automatically if left at `NULL`.</dd></dl>

Arguments

Read raw NIFTI v1 data from file (which may contain the FreeSurfer hack). — read.nifti1.data

<dl>

<dt>filepath</dt>
<dd>path to a NIFTI v1 file (single file version), which can contain the FreeSurfer hack.</dd>


<dt>drop_empty_dims</dt>
<dd>logical, whether to drop empty dimensions in the loaded data array.</dd>


<dt>header</dt>
<dd>optional nifti header obtained from <code>read.nifti1.header</code>. Will be loaded automatically if left at `NULL`.</dd>

</dl>

read.nifti1.data: Read raw NIFTI v1 data from file (which may contain the FreeSurfer hack).

Description

Usage

Value

Arguments