analyze.mat.sidecar.to.vox2ras

Read the transformation matrix that SPM and FreeSurfer write into the <code>.mat</code> file next to an ANALYZE
image, and convert it to the convention used by this package (0-based voxel indices, right-anterior-superior
world coordinates). See the geometry section of <code>read.fs.volume.analyze</code> for the details.

internal

Provides functions to read and write neuroimaging data in various file formats, with a focus on 'FreeSurfer' formats. This includes, but is not limited to, the following file formats: 1) MGH/MGZ/NIFTI format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surface mesh, given by a list of vertices and a list of faces.

Tim Schc3<a4>fer

freesurferformats

Read and Write 'FreeSurfer' Neuroimaging File Formats

Tim Schäfer

Van Essen Lab 

Montreal Neurological Institute (MNI) 

analyze.mat.sidecar.to.vox2ras function

<dl><dt>matfile</dt>
<dd>character string, the path of the <code>.mat</code> file.</dd></dl>

Arguments

Compute the voxel-to-RAS matrix from the MATLAB sidecar file of an ANALYZE image. — analyze.mat.sidecar.to.vox2ras

<dl>

<dt>matfile</dt>
<dd>character string, the path of the <code>.mat</code> file.</dd>

</dl>

analyze.mat.sidecar.to.vox2ras: Compute the voxel-to-RAS matrix from the MATLAB sidecar file of an ANALYZE image.

Description

Usage

Value

Arguments