cifti.label.table.for.writing

Convert a label table to the format the writer expects.

internal

Provides functions to read and write neuroimaging data in various file formats, with a focus on 'FreeSurfer' formats. This includes, but is not limited to, the following file formats: 1) MGH/MGZ/NIFTI format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surface mesh, given by a list of vertices and a list of faces.

Tim Schc3<a4>fer

freesurferformats

Read and Write 'FreeSurfer' Neuroimaging File Formats

Tim Schäfer

Van Essen Lab 

Montreal Neurological Institute (MNI) 

cifti.label.table.for.writing function

<dl><dt>label_table</dt>
<dd>a data.frame, see <code>cifti.axis.labels</code>, the colortable of
an <code>fs.annot</code> instance, or <code>NULL</code>. The column names are matched case-insensitively, so
the label table that <code>read.fs.parcellation.cifti</code> returns (with the columns
'Key', 'Red', 'Green', 'Blue', 'Alpha' and 'Label') can be passed directly. The
colortable of a FreeSurfer annotation stores the colors in the range 0 to 255, and it
is converted here.</dd></dl>

Arguments

Convert a label table to the format the writer expects. — cifti.label.table.for.writing

<dl>

<dt>label_table</dt>
<dd>a data.frame, see <code>cifti.axis.labels</code>, the colortable of
an <code>fs.annot</code> instance, or <code>NULL</code>. The column names are matched case-insensitively, so
the label table that <code>read.fs.parcellation.cifti</code> returns (with the columns
'Key', 'Red', 'Green', 'Blue', 'Alpha' and 'Label') can be passed directly. The
colortable of a FreeSurfer annotation stores the colors in the range 0 to 255, and it
is converted here.</dd>

</dl>

cifti.label.table.for.writing: Convert a label table to the format the writer expects.

Description

Usage

Value

Arguments