inv.ornt.aff

This is the equivalent of
<code>nibabel.orientations.inv_ornt_aff()</code>: given an orientation and the
shape of the array it was applied to, it returns the affine that maps
coordinates in the transformed space back to coordinates in the original
space.

internal

Provides functions to read and write neuroimaging data in various file formats, with a focus on 'FreeSurfer' formats. This includes, but is not limited to, the following file formats: 1) MGH/MGZ/NIFTI format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surface mesh, given by a list of vertices and a list of faces.

Tim Schc3<a4>fer

freesurferformats

Read and Write 'FreeSurfer' Neuroimaging File Formats

Tim Schäfer

Van Essen Lab 

Montreal Neurological Institute (MNI) 

inv.ornt.aff function

<dl><dt>ornt</dt>
<dd>numeric matrix with 2 columns, the orientation.</dd>
<dt>shape</dt>
<dd>numeric vector, the shape (dimensions) of the array.</dd></dl>

Arguments

Build the affine that undoes an orientation transform. — inv.ornt.aff

<dl>

<dt>ornt</dt>
<dd>numeric matrix with 2 columns, the orientation.</dd>


<dt>shape</dt>
<dd>numeric vector, the shape (dimensions) of the array.</dd>

</dl>

inv.ornt.aff: Build the affine that undoes an orientation transform.

Description

Usage

Value

Arguments