ni1header.template

Create a template NIFTI v1 header. You will have to adapt it for your use case.

Provides functions to read and write neuroimaging data in various file formats, with a focus on 'FreeSurfer' formats. This includes, but is not limited to, the following file formats: 1) MGH/MGZ/NIFTI format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surface mesh, given by a list of vertices and a list of faces.

Tim Schc3<a4>fer

freesurferformats

Read and Write 'FreeSurfer' Neuroimaging File Formats

Tim Schäfer

Van Essen Lab 

Montreal Neurological Institute (MNI) 

ni1header.template function

<dl><dt>pair</dt>
<dd>logical, whether the template describes a NIFTI v1 pair file (a <code>.hdr</code> header file plus a separate
<code>.img</code> data file, the variant that is also used by the ANALYZE 7.5 format and that FSL writes) instead of a
single file (<code>.nii</code>, the header and the data in one file). The two variants differ in the <code>magic</code> field and in
the <code>vox_offset</code> field, which is 352 for a single file (the data starts behind the header) and 0 for a pair (the
data starts at the first byte of the <code>.img</code> file). Both variants are written by <code>write.nifti1</code>.</dd></dl>

Arguments

Create a template NIFTI v1 header. You will have to adapt it for your use case. — ni1header.template

<dl>

<dt>pair</dt>
<dd>logical, whether the template describes a NIFTI v1 pair file (a <code>.hdr</code> header file plus a separate
<code>.img</code> data file, the variant that is also used by the ANALYZE 7.5 format and that FSL writes) instead of a
single file (<code>.nii</code>, the header and the data in one file). The two variants differ in the <code>magic</code> field and in
the <code>vox_offset</code> field, which is 352 for a single file (the data starts behind the header) and 0 for a pair (the
data starts at the first byte of the <code>.img</code> file). Both variants are written by <code>write.nifti1</code>.</dd>

</dl>

ni1header.template: Create a template NIFTI v1 header. You will have to adapt it for your use case.

Description

Usage

Value

Arguments

See Also