parse.mrtrix.count

The entry is optional: the MRtrix documentation lists only
'file' and 'datatype' as required header keys, and explicitly notes that
the value may not reflect the number of streamlines actually stored, e.g.,
when a command was terminated prematurely. The value is therefore used as a
hint only, never to decide how much data to read.

internal

Provides functions to read and write neuroimaging data in various file formats, with a focus on 'FreeSurfer' formats. This includes, but is not limited to, the following file formats: 1) MGH/MGZ/NIFTI format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surface mesh, given by a list of vertices and a list of faces.

Tim Schc3<a4>fer

freesurferformats

Read and Write 'FreeSurfer' Neuroimaging File Formats

Tim Schäfer

Van Essen Lab 

Montreal Neurological Institute (MNI) 

parse.mrtrix.count function

<dl><dt>header</dt>
<dd>named list, the parsed header.</dd></dl>

Arguments

Parse the 'count' entry of an MRtrix TCK/TSF header. — parse.mrtrix.count

<dl>

<dt>header</dt>
<dd>named list, the parsed header.</dd>

</dl>

parse.mrtrix.count: Parse the 'count' entry of an MRtrix TCK/TSF header.

Description

Usage

Value

Arguments