vol.plane.axes

When using plane names, this function assumes that the volume is in the standard FreeSurfer orientation, as returned by reading a conformed volume with functions like <code>subject.volume</code>.

internal

Provides high-level access to neuroimaging data from standard software packages like 'FreeSurfer' <http://freesurfer.net/> on the level of subjects and groups. Load morphometry data, surfaces and brain parcellations based on atlases. Mask data using labels, load data for specific atlas regions only, and visualize data and statistical results directly in 'R'.

Tim Schc3<a4>fer

fsbrain

Managing and Visualizing Brain Surface Data

Tim Schäfer

vol.plane.axes function

<dl><dt>plane</dt>
<dd>integer or string. If a string, one of "axial", "coronal", or "sagittal". If this is an integer vector of length 2 already, it is returned as given. If it is a single integer, it is interpreted as an axis index, and the plane orthogonal to the axis is returned. A warning on using the plane names: these only make sense if the volume is in the expected orientation, no checking whatsoever on this is performed.</dd></dl>

Arguments

Get indices of the axes defining the given plane. — vol.plane.axes

<dl>

<dt>plane</dt>
<dd>integer or string. If a string, one of "axial", "coronal", or "sagittal". If this is an integer vector of length 2 already, it is returned as given. If it is a single integer, it is interpreted as an axis index, and the plane orthogonal to the axis is returned. A warning on using the plane names: these only make sense if the volume is in the expected orientation, no checking whatsoever on this is performed.</dd>

</dl>

vol.plane.axes: Get indices of the axes defining the given plane.

Description

Usage

Value

Arguments