context.mesh.resolve.subjects.dir

Determine the subjects dir from which the requested context mesh can be loaded, if the user did not pass one. For the template subject 'fsaverage' the surfaces are downloaded into the package cache if they are not available, for other subjects the standard search locations are checked, see <code>find.subjectsdir.of</code>.

internal

Provides high-level access to neuroimaging data from standard software packages like 'FreeSurfer' <https://freesurfer.net/> on the level of subjects and groups. Load morphometry data, surfaces and brain parcellations based on atlases. Mask data using labels, load data for specific atlas regions only, and visualize data and statistical results directly in 'R'.

Tim Schc3<a4>fer

fsbrain

Managing and Visualizing Brain Surface Data

Tim Schäfer

The General Hospital Corporation (Boston, MA) 

Van Essen Lab 

Alexander Schaefer

Ru Kong

Lingzhong Fan

Edmund T. Rolls

Matthew F. Glasser

Kathryn Mills

context.mesh.resolve.subjects.dir function

<dl><dt>subject_id</dt>
<dd>string, the subject identifier.</dd>
<dt>context</dt>
<dd>the context mesh definition, as passed by the user, see <code>vis.volume.clusters</code>. A subject id and subjects dir can be part of this definition, in which case they take precedence.</dd></dl>

Arguments

Resolve the subjects dir for a context mesh. — context.mesh.resolve.subjects.dir

<dl>

<dt>subject_id</dt>
<dd>string, the subject identifier.</dd>


<dt>context</dt>
<dd>the context mesh definition, as passed by the user, see <code>vis.volume.clusters</code>. A subject id and subjects dir can be part of this definition, in which case they take precedence.</dd>

</dl>

Resolve the subjects dir for a context mesh.

context.mesh.resolve.subjects.dir: Resolve the subjects dir for a context mesh.

Description

Usage

Value

Arguments