mesh.atlas.context.layer

Compute the optional context mesh (typically a semi-transparent cortex) that is
rendered together with the data meshes of a mesh atlas.

internal

Provides high-level access to neuroimaging data from standard software packages like 'FreeSurfer' <https://freesurfer.net/> on the level of subjects and groups. Load morphometry data, surfaces and brain parcellations based on atlases. Mask data using labels, load data for specific atlas regions only, and visualize data and statistical results directly in 'R'.

Tim Schc3<a4>fer

fsbrain

Managing and Visualizing Brain Surface Data

Tim Schäfer

The General Hospital Corporation (Boston, MA) 

Van Essen Lab 

Alexander Schaefer

Ru Kong

Lingzhong Fan

Edmund T. Rolls

Matthew F. Glasser

Kathryn Mills

mesh.atlas.context.layer function

<dl><dt>subjects_dir</dt>
<dd>string, the subjects dir to use for the context mesh.</dd>
<dt>subject_id</dt>
<dd>string, the subject id to use for the context mesh.</dd>
<dt>cortex</dt>
<dd>the context definition. Either a character string (the name of the surface mesh to
use, e.g., 'white'), a named list of options for the context mesh (supported entries are
'surface', 'color', 'alpha', 'style', 'subjects_dir' and 'subject_id'), an
<code>fs.coloredmesh</code> instance, or a hemilist of such instances (which is then used as-is).</dd></dl>

Arguments

Compute the context layer of a mesh atlas visualization. — mesh.atlas.context.layer

<dl>

<dt>subjects_dir</dt>
<dd>string, the subjects dir to use for the context mesh.</dd>


<dt>subject_id</dt>
<dd>string, the subject id to use for the context mesh.</dd>


<dt>cortex</dt>
<dd>the context definition. Either a character string (the name of the surface mesh to
use, e.g., 'white'), a named list of options for the context mesh (supported entries are
'surface', 'color', 'alpha', 'style', 'subjects_dir' and 'subject_id'), an
<code>fs.coloredmesh</code> instance, or a hemilist of such instances (which is then used as-is).</dd>

</dl>

Compute the context layer of a mesh atlas visualization.

mesh.atlas.context.layer: Compute the context layer of a mesh atlas visualization.

Description

Usage

Value

Arguments