Learn R Programming

fsbrain (version 1.0.0)

volume.cluster.extremes: Compute the highest iso-level per sign.

Description

Computes the highest absolute iso-level for the positive and the negative clusters, i.e., the level of the innermost shell of a cluster. If max_level is NULL, the max_level_quantile quantile of the absolute values beyond the threshold is used, so that a single extreme voxel does not dominate the visualization.

Usage

volume.cluster.extremes(
  volume,
  threshold,
  max_level = NULL,
  max_level_quantile = 0.99,
  positive = TRUE,
  negative = TRUE
)

Value

named numerical vector with the entries 'neg' and 'pos' (the highest absolute iso-level of the negative and of the positive clusters), or NA for a sign that has no voxels beyond the threshold (or was not requested).

Arguments

volume

a 3D numerical array.

threshold

single positive number, the cluster threshold.

max_level

single positive number or NULL, the highest level given by the user.

max_level_quantile

single value between 0 and 1, the quantile used to compute the highest level if max_level is NULL.

positive

logical, whether to consider the positive clusters.

negative

logical, whether to consider the negative clusters.