volume.cluster.threshold

Computes the threshold from the data if none was given, namely the requested quantile of the absolute values of the non-zero voxels.

internal

Provides high-level access to neuroimaging data from standard software packages like 'FreeSurfer' <https://freesurfer.net/> on the level of subjects and groups. Load morphometry data, surfaces and brain parcellations based on atlases. Mask data using labels, load data for specific atlas regions only, and visualize data and statistical results directly in 'R'.

Tim Schc3<a4>fer

fsbrain

Managing and Visualizing Brain Surface Data

Tim Schäfer

The General Hospital Corporation (Boston, MA) 

Van Essen Lab 

Alexander Schaefer

Ru Kong

Lingzhong Fan

Edmund T. Rolls

Matthew F. Glasser

Kathryn Mills

volume.cluster.threshold function

<dl><dt>volume</dt>
<dd>a 3D numerical array.</dd>
<dt>threshold</dt>
<dd>single positive number or <code>NULL</code>, the threshold given by the user.</dd>
<dt>threshold_quantile</dt>
<dd>single value between 0 and 1, the quantile used if <code>threshold</code> is <code>NULL</code>.</dd></dl>

Arguments

Compute the cluster threshold of a volume. — volume.cluster.threshold

<dl>

<dt>volume</dt>
<dd>a 3D numerical array.</dd>


<dt>threshold</dt>
<dd>single positive number or <code>NULL</code>, the threshold given by the user.</dd>


<dt>threshold_quantile</dt>
<dd>single value between 0 and 1, the quantile used if <code>threshold</code> is <code>NULL</code>.</dd>

</dl>

Compute the cluster threshold of a volume.

volume.cluster.threshold: Compute the cluster threshold of a volume.

Description

Usage

Value

Arguments