fslbet

infile

outfile

retimg

(logical) If retimg, should file be reoriented when read in?
Passed to <code><a href="/link/readNIfTI?package=fslr&version=1.1" rd-options="" data-mini-rdoc="fslr::readNIfTI">readNIfTI</a></code>.

reorient

(logical) pass to <code><a href="/link/system?package=fslr&version=1.1" rd-options="" data-mini-rdoc="fslr::system">system</a></code>

intern

opts

(character) Use <code>bet</code> or <code>bet2</code> function

betcmd

additional arguments passed to <code><a href="/link/readNIfTI?package=fslr&version=1.1" rd-options="" data-mini-rdoc="fslr::readNIfTI">readNIfTI</a></code>.

This function calls <code>bet</code> to extract a brain
from an image, usually for skull stripping.

Wrapper functions that interface with FSL
    (http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/), a powerful and commonly-used
    neuroimaging software, using system commands. The goal is to be able to
    interface with FSL completely in R, where you pass R nifti objects and the
    function executes an FSL command and returns an R nifti object if desired.

fslbet: Use FSL's Brain Extraction Tool (BET)

Description

Usage

Arguments

Value