fslr (version 1.4.4)

fast: FSL FAST

Description

This function calls fast from FSL

Usage

fast(file, outfile = NULL, retimg = TRUE, reorient = FALSE,
  intern = FALSE, opts = "", out_type = c("seg", "mixeltype", "pve_0",
  "pve_1", "pve_2", "pveseg"), verbose = TRUE, ...)

Arguments

file

(character) image to be manipulated

outfile

(character) resultant image name (optional)

retimg

(logical) return image of class nifti

reorient

(logical) If retimg, should file be reoriented when read in? Passed to readNIfTI.

intern

(logical) to be passed to system

opts

(character) operations to be passed to fast

out_type

(character) Suffix to grab from outfile. For example, output filename is paste0(outfile, "_", out_type)

verbose

(logical) print out command before running

...

additional arguments passed to readNIfTI.

Value

• If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.