This function calls fslreorient2std
fslreorient2std(file, retimg = TRUE, reorient = FALSE,
intern = FALSE, verbose = TRUE, opts = "", ...)fslreorient2std_mat(file, matfile = tempfile(fileext = ".mat"),
verbose = TRUE, ...)
(character) image to be manipulated
(logical) return image of class nifti
(logical) If retimg
, should file be reoriented when read in?
Passed to readnii
.
(logical) to be passed to system
(logical) print out command before running
additional options to pass to fslreorient2std
additional arguments passed to readnii
.
Output file for the matrix for reorientation
If retimg
then object of class nifti. Otherwise,
Result from system command, depends if intern is TRUE or FALSE.