fsl_avscale

avscale

This function calls <code>avscale</code> to get individual
matrices for FSL

Wrapper functions that interface with 'FSL'
<http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>, a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with 'FSL'
completely in R, where you pass R objects of class 'nifti', implemented by
package 'oro.nifti', and the function executes an 'FSL' command and returns an R
object of class 'nifti' if desired.

John Muschelli

fslr

Wrapper Functions for 'FSL' ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')

fsl_avscale function

<dl><dt>file</dt>
<dd>(character) matrix filename</dd>
<dt>volume</dt>
<dd>(character) non-reference volume filename or nifti image</dd>
<dt>parsed</dt>
<dd>(logical) should <code>parse_avscale</code> be run 
after?</dd>
<dt>verbose</dt>
<dd>(logical) print out command before running</dd>
<dt>...</dt>
<dd>not used, but used for duplicating <code>avscale</code> as alias</dd></dl>

Arguments

Scale Affine Matrix using avscale — fsl_avscale

<dl>

<dt>file</dt>
<dd>(character) matrix filename</dd>


<dt>volume</dt>
<dd>(character) non-reference volume filename or nifti image</dd>


<dt>parsed</dt>
<dd>(logical) should <code>parse_avscale</code> be run 
after?</dd>


<dt>verbose</dt>
<dd>(logical) print out command before running</dd>


<dt>...</dt>
<dd>not used, but used for duplicating <code>avscale</code> as alias</dd>

</dl>

fsl_avscale: Scale Affine Matrix using `avscale`

Description

Usage

Value

Arguments