funGp (version 0.1.0)

plotPreds: Plot for predictions of a funGp model

Description

This method displays the predicted output values delivered by a funGp Gaussian process model.

Usage

# S4 method for fgpm
plotPreds(model, preds, sOut.pr = NULL, calib = TRUE, sortp = TRUE, ...)

Arguments

model

a '>fgpm object for which the plot is to be made.

preds

a list containing the predictions and confidence bands. In funGp, this argument is just the data structure delivered by the predict method.

sOut.pr

an optional vector (or 1-column matrix) containing the true values of the scalar output at the prediction points. If provided, the method will display two figures: (i) a calibration plot with true vs predicted output values, and (ii) a plot including the true and predicted output along with the confidence bands, sorted according to the increasing order of the true output. If not provided, only the second plot will be made, and the predictions will be arranged according to the increasing order of the predicted output.

calib

an optional boolean indicating if the calibration plot should be displayed. Ignored if sOut.pr is not provided. Default is TRUE.

sortp

an optional boolean indicating if the plot of sorted output should be displayed. Default is TRUE.

...

additional arguments affecting the display. Since this method allows to generate two plots from a single function call, the extra arguments for each plot should be included in a list. For the calibration plot, the list should be called calib.gpars. For the plot of the output in increasing order, the list should be called sortp.gpars. The following typical graphics parameters are valid entries of both lists: xlim, ylim, xlab, ylab, main. The boolean argument legends can also be included in any of the two lists in order to control the display of legends in the corresponding plot.

Value

None.

See Also

* fgpm for the construction of funGp models;

* plotLOO for model diagnostic plots;

* simulate for simulations based on a funGp model;

* plotSims for simulation plots.

Examples

# NOT RUN {
# plotting predictions without the true output values______________________________________
# building the model
set.seed(100)
n.tr <- 25
sIn <- expand.grid(x1 = seq(0,1,length = sqrt(n.tr)), x2 = seq(0,1,length = sqrt(n.tr)))
fIn <- list(f1 = matrix(runif(n.tr*10), ncol = 10), f2 = matrix(runif(n.tr*22), ncol = 22))
sOut <- fgp_BB3(sIn, fIn, n.tr)
m1 <- fgpm(sIn = sIn, fIn = fIn, sOut = sOut)

# making predictions
n.pr <- 100
sIn.pr <- as.matrix(expand.grid(x1 = seq(0,1,length = sqrt(n.pr)),
                                x2 = seq(0,1,length = sqrt(n.pr))))
fIn.pr <- list(f1 = matrix(runif(n.pr*10), ncol = 10), matrix(runif(n.pr*22), ncol = 22))
m1.preds <- predict(m1, sIn.pr = sIn.pr, fIn.pr = fIn.pr)

# plotting predictions
plotPreds(m1, preds = m1.preds)


# plotting predictions and true output values______________________________________________
# building the model
set.seed(100)
n.tr <- 25
sIn <- expand.grid(x1 = seq(0,1,length = sqrt(n.tr)), x2 = seq(0,1,length = sqrt(n.tr)))
fIn <- list(f1 = matrix(runif(n.tr*10), ncol = 10), f2 = matrix(runif(n.tr*22), ncol = 22))
sOut <- fgp_BB3(sIn, fIn, n.tr)
m1 <- fgpm(sIn = sIn, fIn = fIn, sOut = sOut)

# making predictions
n.pr <- 100
sIn.pr <- as.matrix(expand.grid(x1 = seq(0,1,length = sqrt(n.pr)),
                                x2 = seq(0,1,length = sqrt(n.pr))))
fIn.pr <- list(f1 = matrix(runif(n.pr*10), ncol = 10), matrix(runif(n.pr*22), ncol = 22))
m1.preds <- predict(m1, sIn.pr = sIn.pr, fIn.pr = fIn.pr)

# generating output data for validation
sOut.pr <- fgp_BB3(sIn.pr, fIn.pr, n.pr)

# plotting predictions
plotPreds(m1, m1.preds, sOut.pr)

# only calibration plot
plotPreds(m1, m1.preds, sOut.pr, sortp = FALSE)

# only sorted output plot
plotPreds(m1, m1.preds, sOut.pr, calib = FALSE)

# }