func2vis (version 1.0-3)

Clean and Visualize Over Expression Results from 'ConsensusPathDB'

Description

Provides functions to have visualization and clean-up of enriched gene ontologies (GO) terms, protein complexes and pathways (obtained from multiple databases) using 'ConsensusPathDB' from gene set over-expression analysis. Performs clustering of pathway based on similarity of over-expressed gene sets and visualizations similar to Ingenuity Pathway Analysis (IPA) when up and down regulated genes are known. The methods are described in a paper currently submitted by Orecchioni et al, 2020 in Nanoscale.

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Install

install.packages('func2vis')

Monthly Downloads

236

Version

1.0-3

License

GPL (>= 3)

Maintainer

Last Published

March 16th, 2023

Functions in func2vis (1.0-3)