gmean_bymot_LOO

<p>a numeric vector. The vector <code>fobs</code> contains the
quantitative performances of assemblages.</p>

fobs

<p>Take a vector <code>fobs</code> of assembly performances
that share a same assembly motif,
and return a vector of performances
predicted as the geometric mean of performances
of all assemblages.</p>

internal

Cluster together the components that make up an interactive
system on the basis of their functional redundancy
for one or more collective, systemic performances.
Plot the hierarchical tree of component clusters,
the modelled and predicted performances of component assemblages,
and other results associated with a functional clustering.
Test and prioritize the significance of the different components
that make up the interactive system,
of the different assemblages of components that make up the dataset,
and of the different performances observed on the component assemblages.
The method finds application in ecology, for instance,
where the system is an ecosystem, the components are organisms or species,
and the systemic performance is the production of biomass
or the respiration of the ecosystem.
The method is extensively described in
Jaillard B, Deleporte P, Loreau M, Violle C (2018)
"A combinatorial analysis using observational data identifies species
that govern ecosystem functioning"
<doi:10.1371/journal.pone.0201135>.

Beno<c3><ae>t Jaillard

functClust

Functional Clustering of Redundant Components of a System

Philippe Deleporte

Michel Loreau

Cyrille Violle

gmean_bymot_LOO function

Geometric mean
by assembly motif
using leave-one-out method — gmean_bymot_LOO

Geometric mean
by assembly motif
using leave-one-out method

gmean_bymot_LOO: Geometric mean by assembly motif using leave-one-out method

Description

Usage

Arguments

Value

Details

See Also