fuzzyforest (version 1.0.0)

WGCNA_control: Set Parameters for WGCNA Step of Fuzzy Forests

Description

Creates WGCNA_control object for controlling WGCNA will be carried out.

Usage

WGCNA_control(power = 6, ...)

Arguments

power

Power of adjacency function.

...

Additional arguments. See blockwiseModules for details.

Value

• An object of type WGCNA_control.

References

Bin Zhang and Steve Horvath (2005) "A General Framework for Weighted Gene Co-Expression Network Analysis", Statistical Applications in Genetics and Molecular Biology: Vol. 4: No. 1, Article 17

Examples

WGCNA_params <- WGCNA_control(p=7, minModuleSize=30, TOMType = "unsigned",
                              reassignThreshold = 0, mergeCutHeight = 0.25,
                              numericLabels = TRUE, pamRespectsDendro = FALSE)