RDocumentation
Moon
Learn R
Search all packages and functions
g3viz (version 1.1.5)
Interactively Visualize Genetic Mutation Data using a Lollipop-Diagram
Description
Interface for 'g3-lollipop' JavaScript library. Visualize genetic mutation data using an interactive lollipop diagram in Studio or your browser.
Copy Link
Copy
Link to current version
Version
Version
1.1.5
1.1.4
1.1.3
1.1.2
1.1.1
1.1.0
1.0.4
1.0.0
0.1.4
0.1.3
Down Chevron
Install
install.packages('g3viz')
Monthly Downloads
116
Version
1.1.5
License
MIT + file LICENSE
Issues
17
Pull Requests
0
Stars
30
Forks
18
Repository
https://github.com/G3viz/g3viz
Maintainer
Xin Guo
Last Published
August 19th, 2022
Functions in g3viz (1.1.5)
Search functions
mapMutationTypeToMutationClass
Map from mutation type (aka, variant classification) to mutation class
g3Lollipop.options
G3Lollipop plot options
mutation.table.df
Default mapping table between mutation type (aka, variant classification) to mutation class
g3Lollipop.theme
G3Lollipop chart options of built-in themes.
g3Lollipop-shiny
Shiny bindings for g3Lollipop
getMutationsFromCbioportal
Query cancer genomic mutation data from cBioPortal
g3Lollipop
Render g3lollipop diagram for the given mutation data
guessMAFColumnName
Guess column name for MAF file
hgnc2pfam
Map from Hugo symbol to Pfam domains
hgnc2uniprot
Mapping from Hugo symbol to UniProt IDs
readMAF
Read MAF file
uniprot2pfam
From UniProt ID to Pfam-A domain composition
parseProteinChange
Extract
amino_acid_position
from
Protein_Change
hgnc2pfam.df
Mapping table between gene.symbol, uniprot.id, and pfam