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g3viz (version 1.1.5)

Interactively Visualize Genetic Mutation Data using a Lollipop-Diagram

Description

Interface for 'g3-lollipop' JavaScript library. Visualize genetic mutation data using an interactive lollipop diagram in Studio or your browser.

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Install

install.packages('g3viz')

Monthly Downloads

276

Version

1.1.5

License

MIT + file LICENSE

Issues

19

Pull Requests

0

Stars

30

Forks

19

Maintainer

Xin Guo

Last Published

August 19th, 2022

Functions in g3viz (1.1.5)

mapMutationTypeToMutationClass

Map from mutation type (aka, variant classification) to mutation class
g3Lollipop.options

G3Lollipop plot options
mutation.table.df

Default mapping table between mutation type (aka, variant classification) to mutation class
g3Lollipop.theme

G3Lollipop chart options of built-in themes.
g3Lollipop-shiny

Shiny bindings for g3Lollipop
getMutationsFromCbioportal

Query cancer genomic mutation data from cBioPortal
g3Lollipop

Render g3lollipop diagram for the given mutation data
guessMAFColumnName

Guess column name for MAF file
hgnc2pfam

Map from Hugo symbol to Pfam domains
hgnc2uniprot

Mapping from Hugo symbol to UniProt IDs
readMAF

Read MAF file
uniprot2pfam

From UniProt ID to Pfam-A domain composition
parseProteinChange

Extract amino_acid_position from Protein_Change
hgnc2pfam.df

Mapping table between gene.symbol, uniprot.id, and pfam