gMCP (version 0.8-5)

graphMCP-class: Class graphMCP

Description

A graphMCP object describes a sequentially rejective multiple test procedure.

Examples

m <- rbind(H11=c(0,   0.5, 0,   0.5, 0,   0  ),
			H21=c(1/3, 0,   1/3, 0,   1/3, 0  ),
			H31=c(0,   0.5, 0,   0,   0,   0.5),
			H12=c(0,   1,   0,   0,   0,   0  ),
			H22=c(0.5, 0,   0.5, 0,   0,   0  ),
			H32=c(0,   1,   0,   0,   0,   0  ))	

weights <- c(1/3, 1/3, 1/3, 0, 0, 0)

# Graph creation
graph <- new("graphMCP", m=m, weights=weights)

# Visualization settings
nodeX <- rep(c(100, 300, 500), 2)
nodeY <- rep(c(100, 300), each=3)
graph@nodeAttr$X <- nodeX
graph@nodeAttr$Y <- nodeY	

getWeights(graph)

getRejected(graph)

pvalues <- c(0.1, 0.008, 0.005, 0.15, 0.04, 0.006)
result <- gMCP(graph, pvalues)

getWeights(result@graphs[[4]])
getRejected(result@graphs[[4]])