Usage
gprofiler(query, organism="hsapiens", ordered_query=F, significant=T,
exclude_iea=F, region_query=F, max_p_value=1, max_set_size=0,
correction_method="analytical", hier_filtering="none",
domain_size="annotated", custom_bg="", numeric_ns="")Arguments
query
list of gene IDs or a list of such lists.
ordered_query
in case output gene lists are ranked this option may be used
to get GSEA style p-values.
significant
whether all or only statistically significant results should be
returned.
exclude_iea
exclude electronic annotations (IEA).
region_query
interpret query as chromosomal ranges.
max_p_value
custom p-value threshold, results with a larger p-value are excluded.
max_set_size
maximum size of functional category, larger categories are excluded.
correction_method
the algorithm used for determining the significance threshold, one of
"gSCS", "fdr", "bonferroni".
hier_filtering
hierarchical filtering strength, one of "none", "moderate", "strong".
domain_size
statistical domain size, one of "annotated", "known".
custom_bg
vector of gene names to use as a statistical background.
numeric_ns
namespace to use for fully numeric IDs.