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gQTLBase (version 1.4.2)
gQTLBase: infrastructure for eQTL, mQTL and similar studies
Description
Infrastructure for eQTL, mQTL and similar studies.
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Version
1.4.2
1.4.1
1.2.0
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Version
1.4.2
License
Artistic-2.0
Maintainer
Vince Carey
Last Published
January 1st, 1970
Functions in gQTLBase (1.4.2)
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storeApply
apply a function over job results in a ciseStore instance
ciseStore-class
Class
"ciseStore"
mergeCIstates
merge ChromImpute chromatin states, or GWAS hit indicators, to a GRanges
storeToFf
extract a vector from store results as ff (out of memory reference); support statistical reductions
storeMapResults
use batchMapResults infrastructure to process results in a ciseStore instance
describeStore
collect basic descriptive statistics on ciseStore instances
extractByProbes
retrieve eqtlTest results from a ciseStore instance
ufeatByTiling
split featurenames of SummarizedExperiment according to tiling, or to achieve simple balance within seqnames
gQTLBase-package
gQTLBase