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gQTLBase (version 1.4.2)

gQTLBase: infrastructure for eQTL, mQTL and similar studies

Description

Infrastructure for eQTL, mQTL and similar studies.

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Version

Version

1.4.2

License

Artistic-2.0

Maintainer

Vince Carey

Last Published

February 15th, 2017

Functions in gQTLBase (1.4.2)

storeApply

apply a function over job results in a ciseStore instance
ciseStore-class

Class "ciseStore"
mergeCIstates

merge ChromImpute chromatin states, or GWAS hit indicators, to a GRanges
storeToFf

extract a vector from store results as ff (out of memory reference); support statistical reductions
storeMapResults

use batchMapResults infrastructure to process results in a ciseStore instance
describeStore

collect basic descriptive statistics on ciseStore instances
extractByProbes

retrieve eqtlTest results from a ciseStore instance
ufeatByTiling

split featurenames of SummarizedExperiment according to tiling, or to achieve simple balance within seqnames
gQTLBase-package

gQTLBase