Learn R Programming

gQTLstats (version 1.4.2)

setFDRfunc: estimate and store function relating association scores to approximate plug-in FDR

Description

estimate and store function relating association scores to approximate plug-in FDR

Usage

setFDRfunc(FDRsupp, fudge = 1e-06, zthresh = 30, maxch = 30, ...)

Arguments

FDRsupp
instance of FDRsupp-class
fudge
if FDR is zero, a log or logistic transform will fail; we add the small positive number fudge to avoid this
zthresh
for association scores greater than this value, a hard value of FDR 0 is assigned
maxch
the model for the functional relationship between association and FDR is subset to observations for which association chisq score is no greater than 1.1*maxch
...
arguments passed to s for the smooth model relating association score to FDR at selected quantiles of the association score distribution

Value

Examples

Run this code
data(filtFDR)
filtFDR2 = setFDRfunc(filtFDR)

Run the code above in your browser using DataLab