matrix2dgCMatrix

dgCMatrix2matrix

MAT2dgCMatrix

MAT2matrix

MAT2ftM

SYMMAT2ftM

coerceGraph

coerceGraph.graphNEL

coerceGraph.igraph

coerceGraph.matrix

coerceGraph.dgCMatrix

adjList2matrix

adjList2dgCMatrix

is_sym_MAT

cell2entry2_cpp

cell2entry_cpp

getCellNumberPrim_cpp

getCellNumber_cpp

nextCellSlicePrim_cpp

nextCellSlice_cpp

nextCell_cpp

permuteCellEntries_cpp

slice2entry_cpp

alignArrays

alignArrays2

allSubsets

allSubsets0

arrayMargin

arrayMargin0

arrayMarginChr_cpp

arrayOp

arrayOp2

arrayPerm

arrayPerm0

extendArrayAlong

extendArrays

getPerm

fitLoglin

propagateLS_cpp

mcsMAT_

topoSortMAT_

triangulateMAT_

sp_setXtf1

solveSPD

adjList2adjMAT

adjList2ftList

adjList2ftM

adjList2tfList

adjList2tfM

glist2setMAT

varNames.parray

nLevels.parray

valueLabels.parray

varNames.array

nLevels.array

valueLabels.array

print.parray

print.ripOrder

plot.ripOrder

maxClique

colSumsPrim

intersectPrim

matchPrim

outerPrim

setdiffPrim

uniquePrim

unlistPrim

rowSumsPrim

lapplyV2I

lapplyI2V

lapplyMatch

isGSD_glist

properties_glist

aperm2

cell2entry

entry2cell

factGrid

getCellNumberC

slice2entry

nextCell

nextCellSlice

permuteCellEntries

makeDimNames

names2pairs

rowmat2list

colmat2list

matrix2list

list2rhsFormula

rhsFormula2list

list2rhsf

rhsf2list

which.arr.ind

which_matrix_index

pairs2num

showf

readf

dual.rep

fit.ggm

Internal functions called by other functions.

internal

gRbase-internal

The gRbase package provides certain general constructs
 which are used by other graphical modelling packages, in particular
 by the packages gRain, gRim and gRc.

     gRbase contains several datasets relevant for use in connection with
 	graphical models. Almost all datasets used in the book Graphical
	Models with R (2012) are contained in gRbase.

     gRbase implements several graph algorithms (based mainly on
 	representing graphs as adjacency matrices - either in the form
	of a standard matrix or a sparse matrix). Some graph
	algorithms are:
	(i) maximum cardinality search (for marked and unmarked graphs).
	(ii) moralize.
	(iii) triangulate.
	(iv) junctionTree.

     gRbase facilities for array operations,

     gRbase implements functions for testing for conditional independence.

     gRbase illustrates how hierarchical log-linear models (hllm) may be
 	implemented and describes concept of gmData (graphical meta
 	data). These features, however, are not maintained anymore and
 	remains in gRbase only because there exists a paper describing
	these facilities: A Common Platform for Graphical Models in R:
	The gRbase Package, Journal of Statistical Software, Vol 14,
	No 17, 2005.

gRbase-internal: Internal gRbase functions

Description

Arguments