#GAGE analysis use the updated GO definitions, instead of
#go.gs.
#the following lines are not run due to long excution time.
#The data generation steop may take 10-30 seconds. You may want
#save the gene set data, i.e. go.hs, for future uses.
#go.hs=go.gsets(species="human")
#data(gse16873)
#hn=(1:6)*2-1
#dcis=(1:6)*2
#go.bp=go.hs$go.sets[go.hs$go.subs$BP]
#gse16873.bp.p <- gage(gse16873, gsets = go.bp,
# ref = hn, samp = dcis)
#Yeast and few othr species gene Id is different from Entre Gene
data(bods)
bods
#not run
#go.sc=go.gsets("Yeast")
#lapply(go.sc$go.sets[1:3], head, 3)
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