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gaggle (version 1.40.0)

Broadcast data between R and Gaggle

Description

This package contains functions enabling data exchange between R and Gaggle enabled bioinformatics software, including Cytoscape, Firegoose and Gaggle Genome Browser.

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Version

Version

1.40.0

License

GPL version 2 or newer

Maintainer

Christopher Bare

Last Published

February 15th, 2017

Functions in gaggle (1.40.0)

getCluster

Create an R variable from Most Recently Broadcast Cluster
disconnectFromGaggle

Disconnect from the Gaggle Boss
testGagglePackage

Run unit tests for the Gaggle Package
getTargetGoose

Which Goose will Receive Broadcasts?
getMatrix

Create an R matrix variable from Most Recently Broadcast Matrix
getJavaClassName

Get Java class name
getTuple

Create an R variable from Most Recently Broadcast Tuple
geese

What Geese (Programs) are Currently Running in the Gaggle?
gaggleInit

Initialize the R Goose, registering with the Gaggle
showGoose

Show a Goose On the Screen
getSpecies

Specify the Species To Which Subsequent Data Belongs
setSpecies

Specify the Species To Which Subsequent Data Belongs
connectToGaggle

Connect to the Gaggle Boss
setTargetGoose

Specify Which Goose will Receive Broadcasts
getNetwork

Create an R network variable from a Broadcast Network
broadcast

Broadcast Data to the Gaggle
newTuple

Manipulate the Gaggle Tuple data type
hideGoose

Hide a Goose from View
getNameList

Create an R variable from Most Recently Broadcast NameList