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gap (version 0.3)
Genetic analysis package
Description
This is an integrated package for genetic data analysis of both population and family data.
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Install
install.packages('gap')
Monthly Downloads
8,541
Version
0.3
License
Programs included in this package by Jing hua Zhao will be under GPL. Specific requirement may be possible for programs written by other authors.
Homepage
http://www.hgmp.mrc.ac.uk/~jzhao
Maintainer
Jing Zhao
Last Published
January 13th, 2004
Functions in gap (0.3)
Search functions
bt
Bradley-Terry model for contingency table
aldh2
ALDH2 markers and Alcoholism
s2k
Statistics for 2 by K table
fbsize
Sample size for family-based linkage and association design
kin.morgan
kinship matrix for simple pedigree
muvar
Means and variances under 1- and 2- locus (biallelic) QTL model
hap.score
Score Statistics for Association of Traits with Haplotypes
pfc
Probability of familial clustering of disease
apoeapoc
APOE/APOC1 markers and Schizophrenia
gcontrol
genomic control
whscore
Whittemore-Halpern scores for allele-sharing
kbyl
LD statistics for two multiallelic loci
hap
Haplotype reconstruction
chow.test
Chow's test for heterogeneity in two regressions
fsnps
A case-control data involving four SNPs for missing genotype
tbyt
LD statistics for two SNPs
pbsize
Power for population-based association design
hla
HLA markers and Schizophrenia
mia
multiple imputation analysis for hap
hap.em
Gene counting for haplotype analysis
gif
Kinship coefficient and genetic index of familiality
htr
Haplotype trend regression
gc.em
Gene counting for haplotype analysis
genecounting
Gene counting for haplotype analysis
hwe.hardy
Hardy-Weinberg equlibrium test
makeped
A function to prepare pedigrees in post-MAKEPED format
mtdt
Transmission/disequilibrium test of a multiallelic marker