Effect-size plot
Cystic fibrosis data
LD statistics for two multiallelic markers
Chow's test for heterogeneity in two regressions
Multivariate meta-analysis based on generalized least squares
Obtain correlation coefficients and their variance-covariances
Quantile-comparison plots
Bayesian false-discovery probability
score statistics for testing genetic linkage of quantitative trait
Hardy-Weinberg equlibrium test for a multiallelic marker
Fixed and random effects model for meta-analysis
ALDH2 markers and Alcoholism
Permutation tests using GENECOUNTING
Haplotype reconstruction
Friedreich Ataxia data
Example data for association plot
Bradley-Terry model for contingency table
Plot haplotype frequencies versus haplotype score statistics
Meta-analysis of p values
APOE/APOC1 markers and schizophrenia
Sample size for family-based linkage and association design
Haplotype trend regression
LD statistics for two diallelic markers
genomic control based on p values
Gene counting for haplotype analysis
Regional association plot
Crohn's disease data
Classic twin models
Q-Q plot for uniformly distributed random variable
genomic control
False-positive report probability
multiple imputation analysis for hap
Genetic analysis package
Probability of familial clustering of disease
A study of Alzheimer's disease with eight SNPs and APOE
Hardy-Weinberg equilibrium test using MCMC
Power calculation for two-stage case-control design
Probability of familial clustering of disease
Kinship coefficient and genetic index of familiality
Power for case-control association design
Print a hap.score object
Means and variances under 1- and 2- locus (biallelic) QTL model
Preparing weight for GENECOUNTING
Functions for single nucleotide polymorphisms (SNPs)
Score statistics for association of traits with haplotypes
The HLA data
Whittemore-Halpern scores for allele-sharing
A function to prepare pedigrees in post-MAKEPED format
A case-control data involving four SNPs with missing genotype
Internal functions for gap
Gene counting for haplotype analysis
kinship matrix for simple pedigree
Transmission/disequilibrium test of a multiallelic marker
Power for population-based association design
Converting pedigree(s) to dot file(s)
A study of Parkinson's disease and MAO gene
Power and sample size for case-cohort design
Gene counting for haplotype analysis
Manhattan plot of p values
Statistics for 2 by K table
A study of Parkinson's disease and SNCA makers